Sparse PCA With Multiple Components

Sparse Principal Component Analysis (sPCA) is a cardinal technique for obtaining combinations of features, or principal components (PCs), that explain the variance of high-dimensional datasets in an interpretable manner. This involves solving a sparsity and orthogonality-constrained convex maximization problem, which is extremely computationally challenging. Most existing works address sparse PCA via methods—such as iteratively computing one sparse PC and deflating the covariance matrix—that do not guarantee the orthogonality, let alone the optimality, of the resulting solution when we seek multiple mutually orthogonal PCs. We challenge this status by reformulating the orthogonality conditions as rank constraints and optimizing over the sparsity and rank constraints simultaneously. We design tight semidefinite relaxations to supply high- quality upper bounds, which we strengthen via additional second-order cone inequalities when each PC’s individual sparsity is specified. Further, we derive a combinatorial upper bound on the maximum amount of variance explained as a function of the support. We exploit these relaxations and bounds to propose exact methods and rounding mechanisms that, together, obtain solutions with a bound gap on the order of 0%–15% for real-world datasets with p = 100s or 1000s of features and r ∈ {2, 3} components. Numerically, our algorithms match (and sometimes surpass) the best performing methods in terms of fraction of variance explained and systematically return PCs that are sparse and orthogonal. In contrast, we find that existing methods like deflation return solutions that violate the orthogonality constraints, even when the data is generated according to sparse orthogonal PCs. Altogether, our approach solves sparse PCA problems with multiple components to certifiable (near) optimality in a practically tractable fashion.