Martine Labbé Parsimonious haplotype estimation from aligned Single Nucleotide Polymorphism (SNP) fragments consists of finding the minimum number of haplotypes necessary to explain a given set of genotypes. This problem is known to be NP-Hard. Here we describe a new integer linear-programming model to tackle this problem based on the concept of class representatives, already used for … Read more
We consider the problem of clustering a set of items into subsets whose sizes are bounded from above and below. We formulate the problem as a graph partitioning problem and propose an integer programming model for solving it. This formulation generalizes several well-known graph partitioning problems from the literature like the clique partitioning problem, the … Read more
We consider the problem of clustering a set of items into subsets whose sizes are bounded from above and below. We formulate the problem as a graph partitioning problem and propose an integer programming model for solving it. This formulation generalizes several well-known graph partitioning problems from the literature like the clique partitioning problem, the … Read more
Consider the problem that consists in maximizing the revenue generated by tolls set on a subset of arcs of a transportation network, and where origin-destination flows are assigned to shortest paths with respect to the sum of tolls and initial costs. In this work, we address the instance where toll arcs must be connected, as … Read more
We consider two (0,1)-linear programming formulations of the graph (vertex-)coloring problem, in which variables are associated to stable sets of the input graph. The first one is a set covering formulation, where the set of vertices has to be covered by a minimum number of stable sets. The second is a set packing formulation, in … Read more
Optimality of a linear inequality in finitely many graph invariants is defined through a geometric approach. For a fixed number of graph nodes, consider all the tuples of values taken by the invariants on a selected class of graphs. Then form the polytope which is the convex hull of all these tuples. By definition, the … Read more
The concentrator location problem is to choose a subset of a given terminal set to install concentrators and to assign each remaining terminal node to a concentrator to minimize the cost of installation and assignment. The concentrators may have capacity constraints. We study the polyhedral properties of concentrator location problems with different capacity structures. We … Read more
The hub location problem with single assignment is the problem of locating hubs and assigning the terminal nodes to hubs in order to minimize the cost of hub installation and the cost of routing the traffic in the network. There may also be capacity restrictions on the amount of traffic that can transit by hubs. … Read more
We study the problem of designing at minimum cost a two-connected network such that each edge belongs to a cycle using at most K edges. This problem is a particular case of the two-connected networks with bounded meshes problem studied by Fortz, Labbé and Maffioli. In this paper, we compute a lower bound on the … Read more
The $p$-Center problem consists in locating $p$ facilities among a set of $M$ possible locations and assigning $N$ clients to them in order to minimize the maximum distance between a client and the facility to which he is allocated. We present a new integer linear programming formulation for this Min-Max problem with a polynomial number … Read more